Avian Rota Virus(CH2 strain) VP6 Protein

Project Info

1)A template with sequence identity of 71.5% was identified by running a BLAST of VP6 protein against a PDB 1QHD(Crystal Structure of VP6 Protein, the major Capsid Protein of Bovine Rota Virus)

2)Structures were predicted for the strains CH2, CH1,PO13 &Turkey using the Modeller8v1 in order to investigate the subgroup epitopes that are conformational.

3)All the structure had a similar fold that of the template evident from the Prosa Z-score.